PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226457.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 439aa    MW: 47664.1 Da    PI: 7.3245
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226457.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.92.7e-3243126283
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas 83 
                     +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el +++s +++++  +++s  ++a 
  XP_008226457.1  43 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELPSWNPHSVstTTASTAVTAM 126
                     79**************************************************************55555333221122211111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2943222IPR005333Transcription factor, TCP
PROSITE profilePS5136933.27345103IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGDTHHHHHP QATTSSRLGI RPSSGLSADI VEVVRGSHIV RSTGRKDRHS KVCTAKGPRD  60
RRVRLAAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAKAAI DELDELPSWN PHSVSTTTAS  120
TAVTAMEAQN PTTTGFHCFA AVDAIGSANR RATMVGSGVS EQIVQNQNPL TNSTLLPPSL  180
DSDAIADTIK SFFPMGASAG AAEAPSSTIQ FQNYPPDLLS RTSSQSQDLR LSLHSFQDPI  240
LLQHQQAQAQ HHQAQTHQNE QTLFSGTQQQ NPLGFDGWTE HHHQQQQAEM NRFQRMVAWN  300
SAGGGDTGNG GGSSSSAGFV FNSLLPTQQS TSSLQPSLFG QGHFFSSQRG PLQSSNSPSV  360
RAWMMDQQNQ QSISHDHHHH HQISPTIHHH NQSSSSISNM GFASGGGFPG FHIPARIHGE  420
EEHDGISDKP SSASSNSRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226457.10.0PREDICTED: transcription factor TCP4
SwissprotQ8LPR51e-108TCP4_ARATH; Transcription factor TCP4
TrEMBLM5WH580.0M5WH58_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s38480.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-46TCP family protein